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linux_hadoop_minimal_installation_instructions_version_2

Linux Hadoop Minimal VM Notes VERSION 2

Beta Version is posted. Basic functionality has been tested.

IMPORTANT: VirtualBox will not work on the new Apple M1 based systems

Version: 2.0-beta8
Date: August 9, 2022
Author: Douglas Eadline Email: deadline(you know what goes here)limulus-computing(and here)com

Hardware Requirements: To run the VM you will need, an x86_64 processor with A MINIMUM of 4 cores/threads, 4+ GB memory, 70G of disk space, and support for HW virtualization.

Unless otherwise noted, all course content, notes, and examples are © Copyright Limulus Computing, Douglas Eadline 2022, All rights reserved.

What Is This?

The Linux Hadoop Minimal is a virtual machine (VM) that can be used to try the examples presented in many of the trainings mentioned on the main page and any of Doug Eadline's instructional videos or books. It provides a fully operational Linux environment that runs Apache Hadoop, Spark, Hive, Kafka, Nifi, HBase, and Sqoop.

The machine also has many supporting packages installed (e.g Anaconda Python3) and at the same time tries to keep the resource usage as low as possible so the VM can used on most laptops. (See below for resource recommendations)

To learn more about the course and my other analytics books and videos, go to:

PLEASE NOTE: This version of Linux Hadoop Minimal (LHM) is still considered “beta.” If you use it and find problems, please send any issues to deadline(you know what goes here)basement-supercomputing.com with “LHM” in the subject line.

Installation Steps (with Videos)

There are now installation videos available for Windows 10 and MacOS. The videos cover installing the LHM into VirtualBox and and how to log into the virtual machine using MobaXterm, Putty, or PowerShell for Windows 10 and Term using MacOS. (NOTE: The current version of LHM may be higher than what is displayed in the videos.)

The videos cover the following steps:

Step 1: Download and install VirtualBox for your environment. VirtualBox is freely available. Note: Some windows environments may need the Extension Pack. See the Virtual Box Web Page.

Step 2: Follow the installation instructions for your Operating System environment. For Red Hat based systems this page, https://tecadmin.net/install-oracle-virtualbox-on-centos-redhat-and-fedora, is helpful. With Linux there is some dependencies on kernel versions and modules that need to be addressed.

If you are using Windows, you will need an “ssh client.” Either of these will work. They are both freely available at no cost. (MobaXterm is recommended)

  • Putty (provides terminal for ssh session)
  • MobaXterm (provides terminal for ssh sessions and allows remote X Windows session)

Step 3: Make sure hardware virtualization is enabled in your BIOS.

Step 3a: On Mac Systems with Big Sur, you may get the Kernel driver not installed (rc=-1908) error. The error is do to new security levels in MacOS. See this page for a fix.

Step 4: Download the https://www.clustermonkey.net/download/Hands-on_Hadoop_Spark/Linux-Hadoop-Minimal-V2.0-beta8.ova image and load it into VirtualBox. (NOTE newer version may be available.)

Step 5: Start the VM. All the essential Hadoop service should be started automatically.

HINT: If your laptop (desktop) has more than 4GB or memory, you can increase the amount of memory for the LHM virtual machine. Before the LHM is started, go to the VirtualBox GUI, select the LHM, then select Settings/System. Use the Base Memory slider to add more memory to the LHM. Make sure you leave enough for the base operating system (Windows, MacOS, Linux) to run.

Connect From Your Local Machine to the LHM Sandbox (as root)

It is possible to login and use the sandbox from the VirtualBox terminal, however, you will have much more flexibility with local terminals. Follow the instructions below for local terminal access.

As a test, open a text terminal and connect to the sandbox as the root user with ssh. Macintosh and Linux machines have ssh and terminal installed, for windows see above (Putty or MobaXterm) or this document:

The root password is: hadoop

ssh [email protected] -p 2222

You are should now be in the /root directory

To confirm all the Hadoop daemons have started enter jps as root The results should list at least 16 daemons as shown below (Ignore Jps entry, process numbers and order will be different)

# jps
2625 QuorumPeerMain
1666 HistoryServer
1701 NameNode
4006 ApplicationHistoryServer
2571 SecondaryNameNode
3755 NodeManager
14412 Jps
2989 DataNode
4174 JobHistoryServer
1295 RunJar
1296 RunJar
3473 ResourceManager
3315 Kafka
3351 HMaster
1656 ZeppelinServer
1306 NetworkServerControl
3550 HRegionServer

User Account

As configured, the LHM comes with one general user account. The account is called:

hands-on

and the password is

minimal

The login command (to get from you local machine to the LHM as user “hands-on”)

ssh [email protected] -p 2222

It is highly recommended that this account be used for the class examples. Remember you need to be user hdfs to do any administrative work in HDFS and running as user hdfs gives you full root control of the HDFS file system. The hdfs account has no active password. To become the hdfs user, log in as root and issue a su - hdfs command.

There is also a user account called “nifi” that is used by the NiFi tool. The password is “nifiLHM”.

Copying Files In and Out of the Virtual Machine

To copy a file from your LOCAL MACHINE into the VM, use the scp command. For instance, to copy the file SOURCE-FILE from your local directory on your LOCAL MACHINE to the “hands-on” account. The password is “minimal” and the command places file in /home/hands-on directory in the VM.

scp -P2222  SOURCE-FILE  [email protected]:/home/hands-on

To be clear, the above command is run on your LOCAL MACHINE. On Macintosh and Linux systems run this from a terminal. On Windows run it from MobaXterm.

To copy a file from the VM to your LOCAL MACHINE and place it in your current directory use the following. (don't forget the .):

scp -P2222 [email protected]:/home/hands-on/SOURCE-FILE .

To be clear, the above command is run on your LOCAL MACHINE.

On Windows, the data will be placed in the MobaXterm “Persistent Home Directory.” In the case of Windows 10 with user “Doug” this would be the following:

C:\Users\Doug\Documents\MobaXterm\home

General Usage Notes

The Linux Hadoop Minimal VERSION 2 includes the following Anaconda and Apache software.

CentOS Linux 7.6 minimal
Anaconda 3: Python 3.7.4
Apache Hadoop 3.3.0
Apache Hive 3.1.2
Apache Spark 2.4.5
Apache Derby 10.14.2.0
Apache Zeppelin 0.8.2
Apache Sqoop-1.4.7
Apache Kafka 2.5.0
Apache NiFi 1.15.3 
Apache HBase 2.4.10

Anaconda Python is the default for all users.

2. The Linux Hadoop Minimal has been tested with VirtualBox on Linux, MacOS 10.12-11.3, and Windows 10 Home addition. It has not been tested with VMware.

3. The Linux Hadoop Minimal Virtual Machine is designed to work on minimal hardware. It is recommended at a MINIMUM your system have an x86_64 processor with at least 4 cores/threads, 4+ GB memory, and 70G of disk space. The VM is set to use 3G of system memory. This will cause some applications to swap to disk, but it should allow the virtual machine to run on a 4GB laptop/desktop. (If you are thinking of using the Cloudera/Hortonworks sandbox then 4+ cores and 16+ GB of memory is recommended)

4. The above packages have not been fully tested although all of the examples from the course should work.

Adding Users

To add yourself as a user with a different user name follow the following steps.

Step 1. As root do the following to create a user and add a password:

useradd -G hadoop USERNAME
passwd USERNAME

Step 2. These steps change to user hdfs and create the user directory in HDFS (as root)

su - hdfs
hdfs dfs -mkdir /user/USERNAME
hdfs dfs -chown USERNAME:hadoop /user/USERNAME
exit

Step 3. Logout and login to the new account

Web UI Access

The various web interfaces shown in class are available using the following URLs. Enter the desired URL in you local browser and the VM should respond.

HDFS web interface:       http://127.0.0.1:50070
YARN Jobs web Interface:  http://127.0.0.1:8088
Zeppelin Web Notebook:    http://127.0.0.1:9995
Spark History Server:     http://127.0.0.1:18080
NiFi:                     http://127.0.0.1:18085

The Zeppelin interface is not configured with a login (i.e. it is run in anonymous mode without the need to log-in). The “Zeppelin Tutorial/Basic Features” notebook used in class works as does some of the SparkRnotebooks.

Using Nifi

Due to the large amount of resources used by NiFi, the Nifi web interface is not automatically started when the LHM starts. To start the NiFi web UI, run the following as user root:

# systemctl start nifi

Be patient, the NIF UI (located at http://127.0.0.1:18085) may take several minutes to start. To stop the Nifi interface, enter (as root):

# systemctl stop nifi

It may also be useful to stop some of the services you do not intend to use with Nifi. For instance, stopping HBase and Kafka (systemctl stop hbase; systemctl stop kafka) will free up resources and help Nifi run better. Don't forget to stop Nifi and restart these services, if you need them.

Getting Data into Zeppelin

If you want to load you own data into a Zeppelin notebook, place the data in the zeppelin account under /home/zeppelin. Login as root to place data in this account then change the ownership to zeppelin user for example:

# cp DATA /home/zeppelin
# chown zeppelin:hadoop /home/zeppelin/DATA

This location is the default path for the Zeppelin interpreter (run pwd in the %sh interpreter).

Database for Sqoop Example

MariaDB (MySQL)has been installed in the VM. The World database used with the Sqoop example in the class has been preloaded into MySQL. SQL login and password for the Sqoop database is sqoop and sqoop

Log Files

The log management in V2.0-beta is has not been fully configured There is currently no logfile management and log directly may fill up and use the sandbox storage. There is a clean-logs.sh script in /root/Hadoop-Minimal-Install-Notes/Hadoop-Hive/scripts This script will remove most of the Hadoop/Spark and system logs (somewhat aggressive)

Stopping and Starting the Hadoop Daemons

The Hadoop Daemons are started and stopped using systemd.

  • hadoop.service - Starts HDFS (NameNode, SNN, and DataNode), YARN (ResourceManager, NodeManager, TimelineServer)
  • derby.service - Used to store Hive metadata
  • hive-metastore.service - Manages Hive metadata
  • hiveserver2.service - Provides access to Hive tables (for Spark)
  • kafka.service - Start Kafka server
  • zeppelin.service - Starts the Zeppelin WebUI
  • spark-history.service - Web UI for Spark history
  • hbase.service - start HBase database
  • nifi.service -Start the Nifi WebUI

All services are started when the LHM starts. Each service can be started, stopped, and checked using systemctl. For example, to start, stop and check status of the Hadoop service use:

# systemctl start hadoop
# systemctl status hadoop
# systemctl stop hadoop

As mentioned, if all the the scripts are running, the jps command (run as root) should show the following (process numbers will be different). The RunJar entrees are for the hiveserver2 and hive-metastore processes.

2625 QuorumPeerMain
1666 HistoryServer
1701 NameNode
4006 ApplicationHistoryServer
2571 SecondaryNameNode
3755 NodeManager
14412 Jps
2989 DataNode
4174 JobHistoryServer
1295 RunJar
1296 RunJar
3473 ResourceManager
3315 Kafka
3351 HMaster
1656 ZeppelinServer
1306 NetworkServerControl
3550 HRegionServer

A local metadata database (called Derby) is needed for Hive, if the NetworkServerControl daemon is not running, then stop and restart the derby daemon:

# systemctl restart derby

Spark can use Hive tables through a hive-metastore and hiveserver2 service. To stop and restart the services (in the following order)

# systemctl restart  hive-metastore
# systemctl restart hiveserver2

Finally, if the Zeppelin web page cannot be reached, the Zeppelin daemon may not be running. Stop and restart the daemon:

 # systemctl restart zeppelin

If any or all of the daemons will not start after the above procedure then the is a bigger issue with the VM. Please contact Eadline and describe the situation.

The scripts used to stop and start the services are located in /opt/services. Under normal operation, these scripts should not have to be run “by hand.”

Stopping the VM

To stop the VM, click on “machine” in the VirtualBox menu bar. Select “Close” and then select the “Save State” option. The next time the machine starts it will have all the changes you made.

Alternatively, you can enter (as root user) from within the VM:

# poweroff

And the VM will gracefully shutdown the Hadoop/Spark services and preserve any changes you made.

VM Installation Documentation

Please see /root/Hadoop-Minimal-Install-Notes directory in the VM for how the packages were installed.

Issues/Bugs

These issues have been addressed in the current version of the VM. Please use the lasted VM and you can avoid these issues.

1. If you have problems loading the OVA image into VirtualBox, check the MD5 signature of the OVA file. The MD5 signature returned by running the program below should match the signature provided here. For each OS, use the following commands (note the name of the OVA file may be different):

For Linux use “md5sum”

$ md5sum Linux-Hadoop-Minimal-V2.0-beta1.ova

For Macintosh use “md5”

$ md5 Linux-Hadoop-Minimal-V2.0-beta1.ova

For Windows 10 (in PowerShell) use “Get-FileHash” (Also, note the use of uppercase)

C:\Users\Doug> Get-FileHash .\Linux-Hadoop-Minimal-V2.0-beta1.ova -Algorithm MD5

2. If the time on the LHM falls out of sync with the host due to hibernation, the following commands can be run to reset the the ntpd time daemon (run as root). NOTE: the host must have Internet access.

  systemctl -l start ntpd
  ntpdate -u pool.ntp.org
  systemctl -l start ntpd
  

To check on the current state of time synchronization run ntpq -pn to list the current “peers” that supply time. A “*” means it is actively synchronized with that peer. No “*” means not synchronized. If the difference between the system time and peer time is too great the ntpd daemon may stop (or never reach synchonization). If the ntpd daemon will not synchronize, perform the above. Example output from ntpq -pn for a time synchronized LHM is as follows.

     remote           refid      st t when poll reach   delay   offset  jitter
==============================================================================
*108.61.73.243   209.51.161.238   2 u   68   64  377   14.452    1.052   0.291
+129.250.35.250  204.2.140.74     2 u    2   64  377   13.251    0.048   0.885
+138.236.128.36  69.89.207.199    2 u   12   64  377   50.255    1.710   1.378
-162.159.200.123 10.106.8.9       3 u    1   64  377   19.879    0.160   0.368

3. Do not use the root account to run examples. Either create your own user account as described above or use the existing “hands-on” user account. The examples will not work if run as the root account.

4. In old versions there is a permission issue in HDFS that prevents Hive jobs from working. To fix it, perform the following steps:

a) login to the VM as root (pw=“hadoop”)

   ssh [email protected] -p 2222

b) then change to hdfs user

   su - hdfs

c) fix the permission error:

   hdfs dfs -chmod o+w /user/hive/warehouse

d) Check the result

   hdfs dfs -ls /user/hive

e) The output of the previous command should look like:

   Found 1 items
   drwxrwxrwx   - hive hadoop          0 2019-01-24 20:43 /user/hive/warehouse

f) Exit out of the hdfs account

   exit

g) exit out the root account

   exit

You should now be back at the terminal on your laptop/desktop

linux_hadoop_minimal_installation_instructions_version_2.txt · Last modified: 2022/08/12 20:32 by deadline