Editing Cluster Benchmarking Packages
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These are codes that you can download (freely) and use for benchmarking. Some of them have benchmark results available and some don't. | These are codes that you can download (freely) and use for benchmarking. Some of them have benchmark results available and some don't. | ||
− | + | * [http://www.cnn.com CNN] The CNN benchmark (just kidding) | |
* [http://www.gromacs.org/ Gromacs] - A great benchmark code. GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions.\ | * [http://www.gromacs.org/ Gromacs] - A great benchmark code. GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions.\ | ||
* [http://hmmer.janelia.org/ HMMER] HMMER is used for profiling hidden Markov models (profile HMMs) to do sensitive database searching using statistical descriptions of a sequence family's consensus. HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis. | * [http://hmmer.janelia.org/ HMMER] HMMER is used for profiling hidden Markov models (profile HMMs) to do sensitive database searching using statistical descriptions of a sequence family's consensus. HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis. |