[Beowulf] automount on high ports
tjrc at sanger.ac.uk
Wed Jul 2 04:19:50 EDT 2008
On 2 Jul 2008, at 8:26 am, Carsten Aulbert wrote:
> OK, we have 1342 nodes which act as servers as well as clients. Every
> node exports a single local directory and all other nodes can mount
> What we do now to optimize the available bandwidth and IOs is spread
> millions of files according to a hash algorithm to all nodes (multiple
> copies as well) and then run a few 1000 jobs opening one file from one
> box then one file from the other box and so on. With a short autofs
> timeout that ought to work. Typically it is possible that a single
> process opens about 10-15 files per second, i.e. making 10-15 mounts
> second. With 4 parallel process per node that's 40-60 mounts/second.
> With a timeout of 5 seconds we should roughly have 200-300 concurrent
> mounts (on average, no idea abut the variance).
Please tell me you're not serious! The overheads of just performing
the NFS mounts are going to kill you, never mind all the network
traffic going all over the place.
Since you've distributed the files to the local disks of the nodes,
surely the right way to perform this work is to schedule the
computations so that each node works on the data on its own local
disk, and doesn't have to talk networked storage at all? Or don't you
know in advance which files a particular job is going to need?
The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in England with number 2742969, whose registered
office is 215 Euston Road, London, NW1 2BE.
Beowulf mailing list, Beowulf at beowulf.org
To change your subscription (digest mode or unsubscribe) visit http://www.beowulf.org/mailman/listinfo/beowulf
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.
More information about the Beowulf