[Beowulf] Big storage

Michael Will / Sr. Cluster Engineer mwill at penguincomputing.com
Tue Sep 11 13:56:59 EDT 2007


Iozone is a very good tool to understand the performance of your storage 
for a variety of
access patterns, including the impact of cache and ram.  It spits out 
the raw data and in addition
allows writing it to a spreadsheet file that you can then graph with 
openoffice or excel in order
to look at the dimensions you are interested in.

The trick is to read the documentation and to specify the correct 
parameters for the use case you are interested in ;-)

Example run  I used for a machine with 2G of RAM. I was only interested 
in the write, read and random read/write
test, so I only specified those. There is a variety of others that are 
more relevant to databases, i.e. backwards read.

I was not interested in a file size below 1G and record sizes below 4k, 
so I specified that as well. 

iozone -c -C -g 4g -i 0 -i 1 -i 2 -n 1g -q 1m -y 4k -a -b $runname.xls

# -c include close() call in timing, relevant for nfs3
# -C show bytes transfered in each child
# -g 4g         maximum file size 4g (should be 8g if we have 4G of RAM)
# -n 1g         minimum file size 1g
# -q 1m         maximum record size 1m
# -y 4k         minimum record size 4k
# -i 0  write, rewrite test
# -i 1  read, reread test
# -i 2 random read/write
# -a fully automatic

Michael

Lombard, David N wrote:
> On Tue, Sep 11, 2007 at 11:54:01AM -0400, Joe Landman wrote:
>   
>> Loic Tortay wrote:
>>
>>     
>>> My pointless result was of course mostly due to cache, with 4 threads
>>> each writing 1 Gbyte to 4 existing 2 GBytes files (one file per
>>> thread).  The block size used was 128 kBytes, all (random) accesses are
>>> block aligned, the value is the average aggregated throughput of all
>>> threads for a 20 minutes run.
>>>       
>> I seem to remember being told in a matter of fact manner by someone some
>> time ago, that only 2GB of IO mattered to them (which was entirely
>> cached BTW), so thats how they measured.  Caused me some head
>> scratching, but, well, ok.
>>     
>
> If that was *truly* their usage, it *is* ok.  But...
>
>   
>> My (large) concern on iozone and related is that it spends most of its
>> time *in cache*.  Its funny, if you go look at the disks during the
>> smaller tests, the blinkenlights don't blinken all that often ...
>> (certainly not below 2GB or so).
>>     
>
> Agreed--it all depends on the phys memory; failing to consider that
> can lead to invalid results.
>
>   
>> Then again, maybe IOzone should be renamed "cache-zone" :)  More
>> seriously, I made some quick source changes to be able to do IOzone far
>> outside cache sizes (and main memory sizes) so I could see what impact
>> this has on the system.  It does have a noticable impact, and I report
>> on it in the benchmark report.
>>     
>
> I've found specifying the appropriate file size works well.  For a while
> now, filesize > 2*memorysize has gotten to uncached performance for
> directly connected devices.  Complications can clearly occur when
> there's additional caching on the other end of the wire.
>
> What have you needed beyond the various sync options, e.g., -e, -G, -k,
> -o, -r?
>
>   
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