[Beowulf] RE: OT: Announcing MPI-HMMER

Joe Landman landman at scalableinformatics.com
Wed Jan 3 20:48:20 EST 2007



Chris Samuel wrote:
> On Thursday 04 January 2007 04:27, David Mathog wrote:
> 
>> Joe and I aparently exist in parallel software universes ;-).
> 
> Being MPI means it can take advantage of high speed interconnects (e.g. 
> building it with MPICH-GM to use native Myrinet).  Of course whether that 
> would benefit HMMER is something I don't know!

It does.  The code does very nicely with low latency (and low OS 
jitter).  XD1's, while discontinued, are sweet boxes.


-- 
Joseph Landman, Ph.D
Founder and CEO
Scalable Informatics LLC,
email: landman at scalableinformatics.com
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