[Beowulf] RE: Compare and contrast MPI implementations
deadline at clustermonkey.net
Thu Dec 15 16:37:48 EST 2005
>> MPI detente is possible. Check out the modules package.
> Sort of the same problem though. lamboot (from lam-mpi) assumes
> that hboot is in the path. There's no time before it invokes
> hboot to run "modules". If there were a preceding stage in
> this instance just using an export statement with PATH would
> have done the trick.
When I used modules in the past, there were environments set up for
compilers and MPIs.
For instance if I wanted to run LAM/MPI compiled for the Intel Compiler,
module load intel
module load lam/intel
now I have a Intel compiler and LAM environment (compiled for intel).
Now the module configuation files need to be created and
you will need an MPI tree (/opt/mpi/) where you have a bunch of MPI
versions. I have found modules one of the most useful things
on a cluster (from a users point of view).
> Is there some way to coerce lamboot to either:
> 1. set up environmental variables (preferably via a script) before
> running its "hboot" command.
> 2. run something other than "hboot" (ie /usr/common/bin/hboot).
> David Mathog
> mathog at caltech.edu
> Manager, Sequence Analysis Facility, Biology Division, Caltech
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