New version of the sge_mpiblast tool

Andrew Wang andrewxwang at yahoo.com.tw
Tue Jul 22 07:48:42 EDT 2003


Somewhat related, Integrating BLAST with SGE:

http://developers.sun.com/solaris/articles/integrating_blast.html

Andrew.

 --- Joseph Landman <landman at scalableinformatics.com>
的訊息:> Hi Folks:
> 
>   We completely rewrote our sge_mpiblast execution
> tool into a real
> program that allows you to run the excellent
> mpiBLAST
> (http://mpiblast.lanl.gov) code within the SGE
> queuing system on a
> bio-cluster.  The new code is named run_mpiblast and
> is available from
> our download page
> (http://scalableinformatics.com/downloads/). 
> Documentation is in process, and the source is
> heavily commented.
> 
>   The principal differences between the old and new
> versions are
> 
> . error detection and problem reporting
> . file staging
> . rewritten in a real programming language, no more
> shell script
> . works within SGE, or from the command line
> . uses config files
> . run isolation
> . debugging and verbosity controls
> 
>   This is a merge between an internal project and
> the ideas behind the
> original code.  Please give it a try and let us know
> how it behaves. 
> The link to the information page is
> http://scalableinformatics.com/sge_mpiblast.html .
> 
> Joe
> 
> -- 
> Joseph Landman, Ph.D
> Scalable Informatics LLC
> email: landman at scalableinformatics.com
>   web: http://scalableinformatics.com
> phone: +1 734 612 4615
> 
> 
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